Software Directory
Abbyy FineReader
ABBYY FineReader is an optical character recognition (OCR) application developed by the Russian company ABBYY
Adobe Acrobat DC Pro (Perpetual license)
PDF tool.
Available in SmartMart.
Manufacturer part number: 65280374AB03A00
Adobe Acrobat DC Pro Subscription
PDF tool. Available via Enterprise Term License Agreement (ETLA) for faculty/staff in the Stanford Licensing Web Store.
Adobe Creative Cloud
Adobe Creative Suite is now Creative Cloud - Stanford has an Enterprise Term License Agreement (a subscription program) with Adobe. Available in the Stanford Licensing Webstore.
Airtable
Cloud-based collaboration platform that combines the simplicity of a spreadsheet with the complexity of a relational database, allowing users to organize and manage information in customizable tables.
Android Studio
Android Studio is the official integrated development environment for Google's Android operating system, built on JetBrains' IntelliJ IDEA software and designed specifically for Android development.
ArcCatalog
ArcCatalog helps GIS users by providing an integrated and unified view of all the data files, databases, and ArcGIS documents.
ArcGIS Business Analyst
Business Analyst Desktop software can build models that help analyze market penetration, customer prospecting, and site evaluation.
ArcGlobe
ArcGIS offers two 3D visualization environments in which to work?ArcGlobe and ArcScene?which allow you to display, analyze, and animate your 3D or 2D data in a 3D space.
ArcHydro Tools
Arc Hydro is a set of data models and tools that operates within ArcGIS to support geospatial and temporal data analyses.
ArcMap
ArcMap is the main component of Esri's ArcGIS suite of geospatial processing programs, and is used primarily to view, edit, create, and analyze geospatial data.
AspenPlus Suite
Aspen Plus is a software package designed to allow a user to build a process model and then simulate the model without tedious calculations.
Benchling
Benchling is a research platform where scientists can design, share, and record experiments on one interface.
BigFix Client
Allows automatic distribution of critical security updates from an automated patch management system
Biologics Suite
This new, easy-to-use suite is designed form the ground up to be the first complete collection of all the tools that are important in modeling biologics, antibodies, and proteins.
BioViz in ChemFinder Ultra
BioViz is a rich toolkit for visualizing numeric data in ChemFinder. Calculate and display structure activity relationships, clustering relationships, and statistical data, including histograms, scatter, logarithmic plots, and dendrograms. Descriptive sta
Calendly
Calendly is the scheduling automation platform with team-based scheduling, solutions and integrations for every department, and advanced security features.
Captivate
Creates interactive simulations and software demonstrations. Purchase through Stanford purchasing system.
Chem3D Ultra
Is the easiest, most powerful way for chemists to view their compounds in three dimensions. Chem3D?s visualization tools makes it easy to assess shape and properties to maximize activity or specificity. Chem3D also includes GAMESS and interfaces to other
ChemBioOffice
The ChemBioOffice software suite combines ChemBioDraw, ChemBio3D, ChemBioViz, ChemBioFinder, BioAssay, Inventory, E-Notebook, ChemScript, ChemDraw ActiveX/Plugin, Chem3D ActiveX, ChemDraw/Excel, ChemNMR, Struct=Name, STATISTICA Base, MNova Lite, GAMESS.
ChemDraw Cloud
"Users can access ChemDraw documents from any computer with an Internet connection. All editing/viewing/managing of ChemDraw documents is done in a web browser (including tablet and mobile devices).
Users can access ChemDraw documents from any computer
ChemDraw for Excel
Adds chemical intelligence to Excel spreadsheets, equipping chemists with Excel?s analysis, sorting and organization tools with ChemDraw?s structural drawing tools. Combining Excel with the power of ChemDraw enables scientists to further manipulate and en
ChemDraw Professional
ChemDraw Professional takes chemical drawing to the next level, with all the features in ChemDraw Prime plus: NMR prediction, BioDraw, advanced Name to Structure, access to ChemDraw Cloud, Enhanced Retrosynthesis tool, and integration with chemical databa
ChemFinder Ultra
Makes organizing a personal compound database a snap. With the ability to search for and correlate structures with properties and to transform data into easy to understand visualizations, ChemFinder accelerates the process of profiling ideal compounds and
ChemOffice Professional
ChemOffice Professional is the most robust, scientifically-intelligent research productivity suite in the world. It builds on the foundations of ChemDraw Professional, and adds access to a broad set of powerful scientific tools* to enable scientific resea
ChemScript
Is a scripting language that exposes the underlying chemical structure processing power of ChemOffice to developers who want to manipulate structures and automate processes
COCO Suite
COCO is a CAPE-OPEN compliant process simulation environment which is exclusively based on CAPE-OPEN technology.
Cold Fusion
Scripting language designed to accelerate the development and deployment of web applications. Purchase from Stanford Procurement.
CombiChem for Excel
Build combinatorial libraries in Microsoft Excel using reagents selected by ChemFinder.
Compressor
Compressor 4 is Apple?s professional encoding software that enables powerful and flexible exporting from Final Cut Pro.
Core Hopping
Comprehensive ligand- and receptor-based scaffold exploration for lead optimization.
CovDock
An all-in-one workflow for pose prediction and scoring of covalently bound ligands.
Crashplan ProE
Continuous invisible backup service provided by IT Services. This is the enterprise version of CrashPlan
CrystalDiffract
CrystalDiffract brings the world of x-ray & neutron powder diffraction to your computer screen, with interactive control and easy characterization of your experimental data. Real-time parameter controls let you experiment with diffraction and sample setti
CrystalMaker
CrystalMaker is the most-efficient way to visualize crystal and molecular structures. Its interactive design lets you see the wood for the trees" and build your own visual understanding of complex materials. CrystalMaker transcends traditional crystallogr
CrystalMaker Academic Package
CSD Discovery
For pharmaceutical and agrochemical researchers, CSD-Discovery provides in one place all the tools you need for discovering new molecules.
CSD Enterprise
CSD-Enterprise includes everything in the CSD-System, CSD-Discovery and CSD-Materials
CSD Materials
CSD-Materials helps you explore exciting new materials through analysing intra-and intermolecular interactions within the lattice, helping you to understand your material?s behaviours and refine its properties.
CSD System
The components in CSD-System provide essential search, visualisation and analysis features to deliver knowledge from the Cambridge Structural Database (CSD). The functionality includes powerful 2D/3D search, extensive geometry analysis tools, intermolecul
CSD-CrossMiner
Discovery-oriented data mining of protein and small molecule crystal structures
DeltaGraph
Scientific and engineering Graphing - also reads in CricketGraph files.
EazyDraw
Software for the Mac. Use it to create illustrations, logos, floor plans and elevations, technical diagrams, flow charts, maps...
Eclipse Stanford Plugin
Eclipse is an enormously popular industrial-strength Java environment with many features.
EndNote Plug-Ins
EndNote Web
Enterprise Guide
Microsoft Windows client application included in the Stanford SAS package.
Fetch
File transfer utility for OS X. Internet file transfer client application. Supports FTP and SFTP.
Field-Based QSAR
Discover and optimize new lead compounds using quantitative predictions of binding-site chemistry.
Filemaker Pro
Cross platform database application. Database that helps you to manage, customize, and share your information on a network or over the web.
Filemaker Pro Advanced
Contains all the features of FileMaker Pro, plus tools to build more powerful, more customized databases.
Filemaker Server
Server software for teams of FileMaker users that want to maximize the performance and security of their shared databases while automating backups and other administrative tasks.
Filemaker Server Advanced
An enhanced version of FileMaker Server that lets administrators securely manage and deploy shared FileMaker Pro database files over networks, intranets, and the Internet.
Final Cut
Tools for real time video and audio editing and production. Versions available include Final Cut Express, Final Cut Server, and Final Cut Studio.
Flash Professional
Creates interactive websites, digital experiences, and mobile content. Subscription purchase.
FlashPaper (discontinued)
Converted files into Web-ready Flash documents or pdfs. Discontinued in 2009.
GarageBand
Makes it easy for novice and experienced musicians alike to perform, record and create their own music. Versions include Remix Tools, Rhythm, Symphony, Voices, World Music
Google Earth and Google Earth Pro
Google Earth and Google Earth Pro are both available for use on campus.
GRASS GIS
Geographic Resources Analysis Support System, commonly referred to as GRASS GIS, is a Geographic Information System (GIS) used for data management, image processing, graphics production, spatial modelling, and visualization of many types of data. It is Fr
GsView
Gsview is a user-friendly viewer for various document formats including Postscript, PDF, XPS, EPUB (version 2, no DRM), CBZ, JPEG, and PNG files. GSView leverages the viewing capabilities of MuPDF, along with the conversion capabilities of Ghostscript to
Handbrake
HandBrake?is a?free and open-source?transcoder?for?digital video?files
HELM Editor
Enables rapid drawing and sharing of biomolecules, including creation of novel monomers and sharing via the HELM notation format developed by the Pistoia Alliance
IDBAnalyzer
Used to combine and analyze data from all IEA?s large-scale assessments, as well as analyze data from most major large-scale assessment surveys, including those from the US National Assessment of Educational Progress (NAEP), and those conducted by the Org
IDL
Programming software used for data analysis, visualization and cross-platform application development.
Igor Pro
Scientific graphing, data analysis, Image processing and programming software tool for scientists and engineers.
Illustrator
Adobe Illustrator software lets you convert bitmaps to vector artwork and paint. Subscription purchase.
iMovie
Helps you turn ordinary home videos into stunning movies and captivating Hollywood-style trailers that are fun to create, watch, and share.
InDesign
PDF and Web Design software featuring tight integration with Adobe Photoshop. Subscription purchase.
Induced Fit
A novel method for fast and accurate prediction of ligand induced conformational changes in receptor active sites.
Inkscape
Inkscape is a free and open-source vector graphics editor; it can be used to create or edit vector graphics such as illustrations, diagrams, line arts, charts, logos and complex paintings.
IsoStar
A knowledge-based library of intermolecular interactions
JMP Pro
JMP was developed to perform simple and complex statistical analyses. It dynamically links statistics with graphics to interactively explore, understand, and visualize data. This allows you to click on any point in a graph, and see the corresponding data
Keynote
Presentation software that includes professionally-designed themes, cinematic transitions, animated text and powerful slide builds.
KNIME Extensions
A modular, highly configurable framework for easy workflow automation and data analysis.
LabVIEW
Graphical development environment for creating flexible and scalable test, measurement, and control applications rapidly.
Mac OS X latest version
OS X version 10.7 and above are purchased through Stanford Apple Purchase Program, which is a punchout vendor in SmartMart. There are multi-packs of licenses available.
Marvin Beans
Marvin. A full featured chemical editor for making science accessible on all platforms. Marvin suite is a chemically intelligent desktop toolkit built to help you draw, edit, publish, render, import and export your chemical structures and as well as allow
Mascot
Mascot is a software search engine that uses mass spectrometry data to identify proteins from peptide sequence databases.?
Materials Science Suite
This innovative new suite provides versatile and powerful tools for the quantum mechanics-based simulation of chemical systems, enabling the analysis and optimization of systems with applications in speciality chemicals and materials science.
Mathcad
Desktop software for performing and documenting engineering and scientific calculations.
Mathematica
Mathematica is a highly sophisticated computational software package developed by Wolfram Research that covers the breadth and depth of technical computing. It combines numeric and symbolic computation with data visualization and programming capabilities
Matlab
MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks. Bookstore sells Matlab/Simulink (perpetual). An annual license for Stanford Extended set is available via Software Licensing.
Measurement Studio Enterprise Edition
The complete integrated measurement solution of tools created specifically for Visual Basic, Visual Studio .NET, and Visual C++ programmers
Membrane Permeability
Physics-based, accurate predictions of passive membrane permeability.
Mendeley Desktop
https://www.mendeley.com/ Mendeley is a free reference manager and an academic social network. Manage your research, showcase your work, connect and collaborate with over six million researchers worldwide.
Mercury Menu for CSD-Discovery
Use the CSD System programmatically
Mercury Menu for CSD-Materials
Materials analysis and engineering
Microsoft Office for Stanford Faculty and Staff - University Owned Machines
Stanford provides Microsoft Office for Windows and Mac, which contain Word, PowerPoint, Excel, Outlook, OneNote, Access, Publisher, InfoPath, and Lync.
Microsoft Office for Stanford Students
Stanford provides Microsoft Office for Windows and Mac, which contain Word, PowerPoint, Excel, Outlook, OneNote, Access, Publisher, InfoPath, and Lync.
Microsoft Office Home Use (HUP)
Microsoft Project for Stanford Faculty and Staff
Project management software is available to Faculty and Staff on their Stanford-owned machines.
Microsoft Remote Desktop
Allows connection to a remote computer and control of that machine
Microsoft Visio
Business and technical diagramming program. Students get it at the software licensing webstore, faculty and staff can download from ESS.
Mnova
MestReNova or Mnova is a multipage, multivendor, multitechnique, and multiplatform analytical chemistry software suite designed as a container for using Mnova plugins. The NMR, MS, NMRP, Verify, and DB client plugins are integrated into Mnova 10.0.0 so t
Mnova ChemDraw Edition
Load, process and analyze 1D NMR and LC/GC/MS data directly on your desktop with data coming from all NMR and many MS vendors.
Mnova DB
Mnova DB is an effective, fully integrated, multiplatform environment for the storage, indexing and searching of analytical chemistry data (NMR, LC/GC/MS and molecular structures). There are three versions: individual, group, and enterprise.
Mnova RM
Simple, facilitated extraction of spectroscopic and chemical kinetic concentration data to help analyze reaction monitoring data.
Motion 5
Apple?s professional motion graphics software for creating titles, effects, and transitions for use in Final Cut Pro.
NI Circuit Design Suite (incl Multism, Ultibord)
NI Circuit Design Suite for Education provides an interactive learning environment where students can explore circuit behavior through simulation and analysis. This complete toolchain is designed with educational features to aid student learning and help
NI SoftMotion Module Version
NI SoftMotion Development Module for LabVIEW is for machine builders and OEMs creating custom motion controllers for better machine performance and for researchers implementing advanced control design algorithms for motion control. The module includes fun
Oligo
Primer Analysis software for polymerase chain reaction (PCR), sequencing, site-directed mutagenesis, and various hybridization applications.
OmniGraffle
A diagramming application made by The Omni Group. OmniGraffle is built only for Mac OS X and the iPad.
Open Refine (was Google Refine )
Google Refine is a standalone desktop application provided by Google for data cleanup and transformation to other formats. It has now been renamed to OpenRefine and is hosted as an open source project on Github. (now called Open Refine)
OriginPro
Origin is the data analysis and graphing software with an easy-to-use interface for beginners, combined with the ability to perform advanced customization as you become more familiar with the application. Take your data analysis to the next level with Or
P450 Site of Metabolism (SOM) Prediction
A tool is used for identifying likely sites of metabolism based on Hammet and Taft- type rules and 3D spatial information in several P450 isoforms.
PaperPile
Paperpile is a web-based commercial reference management software, with special emphasis on integration with Google Docs and Google Scholar.
Parallels Desktop
Application that allows you to run Windows on top of Mac OS X. Windows runs directly on your Mac desktop and you can switch back and forth between operating systems.
Phase
An easy-to-use pharmacophore modeling solution for ligand- and structure-based drug design.
Photoshop
Tool for image manipulation and enhancement. Subscription purchase through Stanford VIP license.
Photoshop Premiere Elements
Reliability, automation of tedious tasks, and creative control for editing videos. Smartmart Purchase.
Pipeline Pilot
Pipeline Pilot?is the authoring tool for the Accelrys Enterprise Platform. It is a scientific visual and dataflow programming language, used in various scientific domains, such as cheminformatics and QSAR, Next Generation Sequencing, image analysis, text
Premiere Pro
a real-time, timeline based proprietary video editing software application. Subscription purchase.
PreQuest
Build searchable databases of in-house crystal structures
Protein Preparation Wizard
An easy-to-use tool for correcting common structural problems and creating reliable, all-atom protein models.
Protein-Ligand Database (PLDB)
An active knowledge base of structural data and protein-ligand interactions.
PyMOL
PyMOL is computer software, a molecular visualization system created by Warren Lyford DeLano. It is user-sponsored, open-source software, released under the Python License.
PyRosetta
PyRosetta?is an interactive Python-based interface to the powerful Rosetta molecular modeling suite. It enables users to design their own custom molecular modeling algorithms using Rosetta sampling methods and energy functions.
Python Celltool
Celltool?is a collection of tools for analysis of shapes from images, and in particular, for analyzing cell shapes from micrographs. Celltool provides methods for extracting shapes from images, aligning and measuring those shapes, plotting shapes, and sta
QGIS
QGIS is a free and open-source cross-platform desktop geographic information system application that supports viewing, editing, and analysis of geospatial data.?
QGIS Desktop
QGIS is a free and open-source cross-platform desktop geographic information system application that supports viewing, editing, and analysis of geospatial data.
QM Polarized Ligand Docking
A novel research solution that combines the power of Glide with the accuracy of QSite.
QT Creator
Qt Creator is a cross-platform C++, JavaScript and QML integrated development environment which is part of the SDK for the Qt GUI application development framework. It includes a visual debugger and an integrated GUI layout and forms designer.
Quantum GIS (Open Source GIS Software)
Collaboratively developed opensource geospatial software. (now just called QGIS)
QuickTime Pro
Create movies for iPhone, iPod, and Apple TV. Save movies from the web and share with family and friends.
R Programming Language
A programming language and software environment for statistical computing and graphics.
R Studio
RStudio is a free and open-source integrated development environment for R, a programming language for statistical computing and graphics.?
Read And Write
Read&Write lets everyone read, write and express themselves more confidently.
RefWorks
RefWorks is a Web-based bibliography and database manager that allows users to create a personal, searchable database of citations. These citations can be formatted into your Microsoft Word documents as footnotes or a custom bibliography.
Refworks Write-n-Cite
Write-N-Cite is a utility that allows users to run an abbreviated version of RefWorks in their word processor.?
Relibase
Storage and analysis of macromolecular structural data.
SAS/CONNECT
Tools for sharing data, applications and processing power across multiple computing environments
SAS/EIS
Provides a syntax-free environment for building user-friendly enterprise information systems
SAS/ETS
Integrated time series and econometric techniques for modeling, forecasting and simulating business processes
SAS/SHARE
Data server that allows multiple users to gain simultaneous access to SAS files
Schrodinger Maestro
A specialized interface to enable efficient and systematic exploration of chemical design space for key technology applications including optoelectronics and reactive systems.
Scientific Word w/ LaTeX
Software for mathematical word processing and LaTeX Typesetting. In 2009, the Publisher, MacKichan, began selling directly to academic users via their website: http://www.mackichan.com/
Scientific Workplace
Software to create, edit and typeset mathematical and scientific text. In 2009, Publisher, MacKichan, began directly selling to academic users from their website, http://www.mackichan.com/
Shape Screening
A fast and efficient tool for shape-based superposition and similarity searching.
Sibelius
Complete software for writing, playing, printing and publishing music notation. (Special Order from Bookstore)
Sigma Plot
Graphing software. Can use with Keyserver subscription. Also available at academic pricing from publisher.
Signals Notebook Individual Edition
Is a powerful new web based Electronic Lab Notebook, enabling users to instantly author and manage notebooks and experiments, facilitating Scientific Collaboration. Max storage available is 5 GB.
SingleCrystal
From the classroom to the laboratory to the synchrotron: SingleCrystal is the easiest way to visualize and understand diffraction properties of crystals. SingleCrystal lets you simulate X-ray, neutron and electron diffraction patterns from single crystals
Small Molecule Drug Discovery
From quantitative structure activity relationships (QSAR) to virtual screening to binding affinity predictions, the comprehensive Small-Molecule Drug Discovery Suite contains all the tools necessary for fragment-, ligand-, and structure-based drug design
Smartsheet
Cloud-based project management tool that provides enhanced sharing and collaboration capabilities in a simple spreadsheet-like interface
SnapGene
SnapGene offers the fastest and easiest way to plan, visualize, and document your molecular biology procedures.
Soil Data Viewer (ArcGIS Extension)
Soil Data Viewer is a tool built as an extension to ArcMap that allows a user to create soil-based thematic maps.
SolidWorks
Design software. The SolidWorks Student Edition includes COSMOS analysis tools. (Special order from bookstore.) If you order via SmartMart, contact FMSC for the part number (723-2772).
SPSS Advanced Models
A powerful set of sophisticated univariate and multivariate analysis techniques
Stanford Email and Calendar
Integrated Email and Calendar system that is the standard for campus users.
Stat/Transfer
Data Conversion - order directly from vendor at http://www.stata.com/order/new/edu/gradplans/direct-ship-pricing/
Stata
Statistical Data Analysis versions Include SE and MP - purchase directly from vendor at this link: https://www.stata.com/order/dl/
Systat
SYSTAT is a powerful statistical analysis and graphics software. Available for personal purchase at academic pricing from OnTheHub.com.
TOAD
Software application used for development and administration of various relational databases using SQL.
UN-SCAN-IT
The UN-SCAN-IT software converts graph images to their underlying (x,y) data.
VPN (Virtual Private Network)
Stanford provides VPN tool to access sites - go to https://itservices.stanford.edu/service/vpn
Xquartz
The?XQuartz?project is an open-source effort to develop a version of the X.Org X Window System that runs on OS X.?
Zotero
Zotero is a free, easy-to-use tool to help youcollect, organize, annotate, cite, and share research.